STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmK1Carbon dioxide concentrating mechanism protein. (111 aa)    
Predicted Functional Partners:
ccmL
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.996
ccmK2
Carbon dioxide concentrating mechanism protein.
 
 
 
0.966
ccmM
Carbon dioxide concentrating mechanism protein.
   
 
 0.944
cce_1971
Unknown.
    
 
 0.881
ccmN
Carbon dioxide concentrating mechanism protein.
   
 
 0.834
cce_3523
Unknown.
 
 
 
 0.697
rbcX
Chaperonin-like protein RbcX.
      
 0.674
rbcL
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
     
 0.665
rbcS
Ribulose bisphosphate carboxylase small subunit.
   
 
 0.612
cmpA
Bicarbontate transport system substrate-binding protein.
      
 0.501
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.