Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccmK2Carbon dioxide concentrating mechanism protein. (103 aa)    
Predicted Functional Partners:
ccmL
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.991
ccmK1
Carbon dioxide concentrating mechanism protein.
 
 
 
0.966
ccmM
Carbon dioxide concentrating mechanism protein.
   
 
 0.913
cce_1971
Unknown.
    
   0.853
rbcL
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
     
 0.832
rbcS
Ribulose bisphosphate carboxylase small subunit.
   
 
 0.757
cce_3523
Unknown.
 
 
 
 0.732
ccmN
Carbon dioxide concentrating mechanism protein.
   
 
 0.715
ndhD4
NADH dehydrogenase subunit 4.
      
 0.603
rbcR
Putative Rubisco transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
      
 0.563
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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