Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_4294Unknown; Contains a GUN4-like domain. (202 aa)    
Predicted Functional Partners:
cce_4293
Hypothetical protein.
       0.773
cce_1368
Hypothetical protein.
  
     0.677
cce_0525
Unknown; Contains a glycosyl transferase, family 2 domain.
  
     0.630
cce_2701
Unknown; Contains a Lambda repressor-like, DNA-binding domain.
  
     0.626
cce_0488
Unknown; Contains a GUN4-like domain.
  
   
0.624
cce_0430
Conserved hypothetical protein.
  
     0.602
cce_1965
Hypothetical protein.
  
     0.599
cce_3062
DUF942-containing protein.
  
     0.592
cce_1276
Hypothetical protein.
  
     0.589
cce_1563
Unknown.
  
     0.578
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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