Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_4302Hypothetical protein; Contains an O-antigen polymerase domain. (463 aa)    
Predicted Functional Partners:
cce_4303
Conserved hypothetical protein.
 
     0.858
cce_3393
Unknown.
  
   
 0.779
cce_2880
Conserved hypothetical protein.
  
     0.771
cce_1156
Hypothetical protein; Contains DUF490.
  
  
 0.759
cce_3191
Hypothetical protein; Contains DUF1239.
  
   
 0.757
cce_2931
Conserved hypothetical protein.
  
     0.756
cce_0112
Unknown.
  
     0.753
cce_0904
Unknown; Contains a Homeodomain-like domain.
 
     0.751
cce_4136
Hypothetical protein; Contains a glycosyl transferase, family 39 and a TPR-like helical domain.
 
     0.748
cce_2983
Unknown; Contains a TPR-like helical domain.
  
   
 0.747
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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