STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4306Unknown; Contains a FAD linked oxidase, N-terminal domain. (492 aa)    
Predicted Functional Partners:
glcE
Glycolate oxidase subunit.
  
     0.692
hoxF
NADH dehydrogenase I chain F.
   
 0.633
cce_4307
Putative haem peroxidase.
       0.615
cce_4308
Hypothetical protein; Contains a cobalamin (vitamin B12) biosynthesis CbiX domain.
       0.456
cce_3078
Polyketide synthase.
  
 
 0.453
glsF
Ferredoxin-dependent glutamate synthase.
     
 0.447
glcF
Glycolate oxidase subunit (Fe-S) protein.
 
  
 0.445
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.