Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
phrA2DNA photolyase. (491 aa)    
Predicted Functional Partners:
cce_1168
Low molecular weight phosphotyrosine protein phosphatase.
 
  
   0.705
sodB
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.513
cce_2752
Putative Deoxyribodipyrimidine photolyase.
 
   
 0.509
cce_2220
Unknown; Contains FAD dependent oxidoreductase and Phytoene dehydrogenase-related domains.
 
  
 0.490
cce_2396
Unknown.
 
  
 0.463
cce_4310
Hypothetical protein.
       0.446
cce_4311
Hypothetical protein.
       0.446
cce_4342
Hypothetical protein; Contains FAD dependent oxidoreductase and Phytoene dehydrogenase-related domains.
 
  
 0.424
recQ
ATP-dependent DNA helicase.
      
 0.422
cce_4312
Unknown.
       0.419
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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