Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cce_4342Hypothetical protein; Contains FAD dependent oxidoreductase and Phytoene dehydrogenase-related domains. (512 aa)    
Predicted Functional Partners:
crtB
Phytoene synthase.
  
 0.807
chlD
Magnesium chelatase, ATPase subunit D; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
 
  
 0.747
cce_4341
Unknown; Contains selenide water dikinase and FAD-dependent pyridine nucleotide-disulphide oxidoreductase domains.
 
     0.727
chlG
Chlorophyll a synthase.
 
  
 0.670
chlP
Geranylgeranyl hydrogenase.
 
  
 0.632
cce_3752
Conserved hypothetical protein.
  
     0.524
cce_3779
mRNA-binding protein.
  
     0.515
chlH1
Magnesium chelatase, subunit H.
  
  
 0.512
chlM
Magnesium-protoporphyrin O-methyltransferase.
 
    0.486
cce_1050
Conserved hypothetical protein.
  
     0.482
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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