Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_4381Hypothetical protein; Contains a Mechanosensitive ion channel, MscS domain. (564 aa)    
Predicted Functional Partners:
cce_0762
Hypothetical protein; Contains a mechanosensitive ion channel, MscS domain.
  
     0.712
cce_2440
Hypothetical protein.
  
     0.648
cce_0247
Unknown; Contains a Mechanosensitive ion channel, MscS domain.
  
     0.579
cce_4380
Putative Cl- channel, voltage gated.
  
     0.514
cce_3453
Unknown.
  
     0.483
holB
DNA polymerase III, delta prime subunit.
       0.447
cce_2980
Hypothetical protein; Contains a mechanosensitive ion channel, MscS domain.
  
     0.426
cce_3868
Hypothetical protein.
 
    0.421
cce_5217
Hypothetical protein.
  
     0.416
cce_4574
Unknown; Contains a Mechanosensitive ion channel, MscS domain.
  
     0.415
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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