STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_4384Unknown; Contains a SMAD/FHA domain. (151 aa)    
Predicted Functional Partners:
cce_2950
Conserved hypothetical protein.
  
     0.750
cce_4257
Unknown.
  
     0.739
cce_1894
Conserved hypothetical protein.
  
     0.677
cce_4611
Unknown.
  
     0.653
cce_3427
Conserved hypothetical protein.
  
     0.651
cce_1280
Two-component sensor histidine kinase.
  
    0.645
cce_1545
rfrA family pentapeptide repeat.
  
    0.631
cce_0270
Unknown.
  
     0.625
cce_0788
Unknown; Contains a peptidase S8 and S53 domain.
  
    0.600
cce_0823
Unknown.
  
     0.599
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.