Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cce_4389 | rnhA | cce_4389 | cce_4390 | Unknown. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.584 |
| cce_4391 | rhnB | cce_4391 | cce_3323 | Probable guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.464 |
| cce_4391 | rnhA | cce_4391 | cce_4390 | Probable guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.511 |
| cce_4951 | rhnB | cce_4951 | cce_3323 | Hypothetical protein; Contains a polynucleotidyl transferase, Ribonuclease H fold domain. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.563 |
| cce_4951 | rnhA | cce_4951 | cce_4390 | Hypothetical protein; Contains a polynucleotidyl transferase, Ribonuclease H fold domain. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.900 |
| cce_4951 | ssb | cce_4951 | cce_2001 | Hypothetical protein; Contains a polynucleotidyl transferase, Ribonuclease H fold domain. | Single-stranded DNA-binding protein. | 0.500 |
| cce_4951 | ycf41 | cce_4951 | cce_2200 | Hypothetical protein; Contains a polynucleotidyl transferase, Ribonuclease H fold domain. | Putative YCF41. | 0.500 |
| cyl0033 | rhnB | cce_0607 | cce_3323 | Putative ribonuclease H. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.551 |
| cyl0033 | rnhA | cce_0607 | cce_4390 | Putative ribonuclease H. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.900 |
| cyl0033 | ssb | cce_0607 | cce_2001 | Putative ribonuclease H. | Single-stranded DNA-binding protein. | 0.491 |
| cyl0033 | ycf41 | cce_0607 | cce_2200 | Putative ribonuclease H. | Putative YCF41. | 0.491 |
| deoC | rnhA | cce_3026 | cce_4390 | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.855 |
| dnaX | rnhA | cce_2531 | cce_4390 | DNA polymerase III gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.500 |
| dnaX | ssb | cce_2531 | cce_2001 | DNA polymerase III gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Single-stranded DNA-binding protein. | 0.788 |
| dnaX | ycf41 | cce_2531 | cce_2200 | DNA polymerase III gamma and tau subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Putative YCF41. | 0.788 |
| folB | rnhA | cce_4420 | cce_4390 | Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.549 |
| rhnB | cce_4391 | cce_3323 | cce_4391 | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Probable guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.464 |
| rhnB | cce_4951 | cce_3323 | cce_4951 | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Hypothetical protein; Contains a polynucleotidyl transferase, Ribonuclease H fold domain. | 0.563 |
| rhnB | cyl0033 | cce_3323 | cce_0607 | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Putative ribonuclease H. | 0.551 |
| rhnB | rnhA | cce_3323 | cce_4390 | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.551 |
page 1 of 2