STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4492OppC in a binding protein-dependent transport system. (304 aa)    
Predicted Functional Partners:
cce_2386
ATP-binding protein of ABC transporter; Belongs to the ABC transporter superfamily.
  
 0.985
cce_3634
ATP-binding protein of ABC transporter; Belongs to the ABC transporter superfamily.
  
 0.985
cce_0780
Permease protein of oligopeptide ABC transporter.
  
 0.978
cce_2297
Binding protein dependent transport systems inner membrane component.
  
 0.956
cce_0991
Permease protein of ABC transporter.
  
 0.945
cce_0948
ATP-binding protein of amino acid ABC transporter.
 
    
 0.900
cce_4113
devA-like ABC transporter ATP-binding protein.
 
 
    0.870
cce_3340
Extracellular solute-binding protein, family 5.
 
 0.869
cce_0779
Extracellular solute-binding protein, family 5.
 
 0.864
devA
ABC transporter ATP-binding protein, probable glycolipid exporter.
 
 
    0.862
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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