cce_4508 protein (Crocosphaera subtropica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cce_4508

Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain. (335 aa)

Predicted Functional Partners:

mreB

0.863

rsu1

0.810

pgsA

0.758

rodA

0.618

cce_3458

0.571

cce_4506

0.501

mreC

0.462

ispG

0.462

cinA

0.452

Your Current Organism:

Crocosphaera subtropica

NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cce_3458	cce_4508	cce_3458	cce_4508	Penicillin binding protein, transpeptidase.	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	0.571
cce_3458	mreB	cce_3458	cce_2000	Penicillin binding protein, transpeptidase.	Rod shape-determining protein.	0.901
cce_3458	mreC	cce_3458	cce_1999	Penicillin binding protein, transpeptidase.	Rod shape-determining protein.	0.913
cce_3458	rodA	cce_3458	cce_0922	Penicillin binding protein, transpeptidase.	Putative rod shape-determining protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.989
cce_4506	cce_4508	cce_4506	cce_4508	Unknown; Contains a Glutathione S-transferase, C-terminal-like domain and a Thioredoxin-like fold domain.	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	0.501
cce_4506	rsu1	cce_4506	cce_4507	Unknown; Contains a Glutathione S-transferase, C-terminal-like domain and a Thioredoxin-like fold domain.	Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.	0.501
cce_4508	cce_3458	cce_4508	cce_3458	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	Penicillin binding protein, transpeptidase.	0.571
cce_4508	cce_4506	cce_4508	cce_4506	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	Unknown; Contains a Glutathione S-transferase, C-terminal-like domain and a Thioredoxin-like fold domain.	0.501
cce_4508	cinA	cce_4508	cce_4251	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	Competence-damage protein; Belongs to the CinA family.	0.452
cce_4508	ispG	cce_4508	cce_2312	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.	0.462
cce_4508	mreB	cce_4508	cce_2000	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	Rod shape-determining protein.	0.863
cce_4508	mreC	cce_4508	cce_1999	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	Rod shape-determining protein.	0.462
cce_4508	pgsA	cce_4508	cce_1533	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.758
cce_4508	rodA	cce_4508	cce_0922	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	Putative rod shape-determining protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.618
cce_4508	rsu1	cce_4508	cce_4507	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family.	0.810
cinA	cce_4508	cce_4251	cce_4508	Competence-damage protein; Belongs to the CinA family.	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	0.452
cinA	pgsA	cce_4251	cce_1533	Competence-damage protein; Belongs to the CinA family.	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.955
ispG	cce_4508	cce_2312	cce_4508	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	0.462
mreB	cce_3458	cce_2000	cce_3458	Rod shape-determining protein.	Penicillin binding protein, transpeptidase.	0.901
mreB	cce_4508	cce_2000	cce_4508	Rod shape-determining protein.	Hypothetical protein; Contains a lambda repressor-like, DNA-binding domain.	0.863

page 1 of 2

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About