Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cce_0113 | cce_3157 | cce_0113 | cce_3157 | Putative transport protein; Belongs to the RNR ribonuclease family. | Ribonuclease II-like protein. | 0.930 |
cce_0113 | cce_5061 | cce_0113 | cce_5061 | Putative transport protein; Belongs to the RNR ribonuclease family. | Putative exoribonuclease II. | 0.976 |
cce_0113 | cce_5063 | cce_0113 | cce_5063 | Putative transport protein; Belongs to the RNR ribonuclease family. | Putative exonuclease. | 0.775 |
cce_0113 | rnd | cce_0113 | cce_1016 | Putative transport protein; Belongs to the RNR ribonuclease family. | Ribonuclease D. | 0.769 |
cce_0113 | rph | cce_0113 | cce_4524 | Putative transport protein; Belongs to the RNR ribonuclease family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.897 |
cce_1776 | rph | cce_1776 | cce_4524 | Putative Ham1-like protein; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.969 |
cce_3157 | cce_0113 | cce_3157 | cce_0113 | Ribonuclease II-like protein. | Putative transport protein; Belongs to the RNR ribonuclease family. | 0.930 |
cce_3157 | cce_5061 | cce_3157 | cce_5061 | Ribonuclease II-like protein. | Putative exoribonuclease II. | 0.901 |
cce_3157 | rnd | cce_3157 | cce_1016 | Ribonuclease II-like protein. | Ribonuclease D. | 0.769 |
cce_3157 | rph | cce_3157 | cce_4524 | Ribonuclease II-like protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.897 |
cce_5061 | cce_0113 | cce_5061 | cce_0113 | Putative exoribonuclease II. | Putative transport protein; Belongs to the RNR ribonuclease family. | 0.976 |
cce_5061 | cce_3157 | cce_5061 | cce_3157 | Putative exoribonuclease II. | Ribonuclease II-like protein. | 0.901 |
cce_5061 | cce_5063 | cce_5061 | cce_5063 | Putative exoribonuclease II. | Putative exonuclease. | 0.919 |
cce_5061 | rnb | cce_5061 | cce_3346 | Putative exoribonuclease II. | Ribonuclease II. | 0.754 |
cce_5061 | rnd | cce_5061 | cce_1016 | Putative exoribonuclease II. | Ribonuclease D. | 0.769 |
cce_5061 | rph | cce_5061 | cce_4524 | Putative exoribonuclease II. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.897 |
cce_5063 | cce_0113 | cce_5063 | cce_0113 | Putative exonuclease. | Putative transport protein; Belongs to the RNR ribonuclease family. | 0.775 |
cce_5063 | cce_5061 | cce_5063 | cce_5061 | Putative exonuclease. | Putative exoribonuclease II. | 0.919 |
cce_5063 | rnd | cce_5063 | cce_1016 | Putative exonuclease. | Ribonuclease D. | 0.769 |
cce_5063 | rph | cce_5063 | cce_4524 | Putative exonuclease. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.897 |
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