STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4529rfrA family pentapeptide repeat. (174 aa)    
Predicted Functional Partners:
cce_3083
rfrA family pentapeptide repeat.
  
     0.775
cce_3102
rfrA family pentapeptide repeat.
  
     0.775
cce_3562
rfrA family pentapeptide repeat.
  
     0.775
cce_2103
rfrA family pentapeptide repeat.
  
     0.774
cce_3013
Hypothetical protein; Contains a WD-40 repeat and peptidase C14, caspase catalytic subunit p20.
  
     0.774
rfr32
rfrA family pentapeptide repeat.
  
     0.769
cce_2203
rfrA family pentapeptide repeat.
  
     0.624
cce_4799
rfrA family pentapeptide repeat.
  
     0.615
infC2
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.489
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.