STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4549ATP-binding protein of ABC transporter. (397 aa)    
Predicted Functional Partners:
cce_1232
Putative ABC transporter permease protein, ABC-2.
 
 0.994
kpsM
Putative polysialic acid transport protein.
 
 0.994
cce_2090
Putative ABC transporter permease protein.
 
 0.994
cce_2091
Putative ABC transporter, ATP binding protein.
  
  
 
0.914
cce_4550
Unknown.
       0.773
cce_1803
Contains a polysaccharide export protein domain.
  
  
 0.662
cce_4188
Unknown; Contains a polysaccharide export protein domain.
  
  
 0.662
cyl0021
Hypothetical protein; Contains a phosphoribosyltransferase domain.
   
    0.605
cce_4551
Unknown; Contains an ASPIC/UnbV domain.
       0.580
cce_4615
Dolichyl-phosphate-mannose synthase.
  
  
 0.440
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.