STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4558Glycosyl transferase, group 1. (400 aa)    
Predicted Functional Partners:
cce_4557
Glycosyl transferase, group 1.
 
     0.756
cce_4654
Glycosyl transferase, group 1.
  
     0.625
cce_4559
Unknown.
  
    0.604
cce_4589
Glycosyl transferase, group 1.
  
     0.553
cce_3590
Glycosyl transferase, group 1.
  
     0.538
cce_4556
Unknown; Contains a heparan sulphate 6-sulfotransferase domain.
       0.474
rfbW
Mannosyl transferase.
  
     0.467
cce_3245
Unknown.
    
 
 0.467
cce_4555
Putative polysaccharide pyruvyl transferase.
  
    0.415
cce_2101
Nucleotide sugar epimerase.
 
    0.409
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.