STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4561Putative integrase/recombinase; Belongs to the 'phage' integrase family. (360 aa)    
Predicted Functional Partners:
cce_4562
Hypothetical protein; Contains a phage integrase-like, catalytic core domain; Belongs to the 'phage' integrase family.
     0.950
cce_4563
Hypothetical protein; Contains a DNA breaking-rejoining enzyme, catalytic core domain.
 
     0.945
dnaB2
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
     
 0.782
cce_4560
Putative endonuclease V.
       0.773
cce_4564
Hypothetical protein.
       0.773
cce_1148
Unknown.
  
     0.518
cce_0954
Unknown.
  
     0.494
cce_3886
Hypothetical protein; Contains a glyoxalase/extradiol/bleomycin resistance/dioxygnease domain.
  
     0.486
cce_2095
Unknown.
  
     0.456
cyl0021
Hypothetical protein; Contains a phosphoribosyltransferase domain.
   
    0.437
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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