STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4574Unknown; Contains a Mechanosensitive ion channel, MscS domain. (302 aa)    
Predicted Functional Partners:
cce_0489
Hypothetical protein; Contains a MscS mechanosensitive ion channel and a cyclic nucleotide-binding domain.
  
     0.521
cce_4573
Hypothetical protein.
       0.517
cce_0762
Hypothetical protein; Contains a mechanosensitive ion channel, MscS domain.
  
     0.495
sbcD
Probable exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.487
cce_3676
Unknown; Contains a Mechanosensitive ion channel, MscS domain.
  
     0.483
cce_0403
Hypothetical protein; Contains a MscS mechanosensitive ion channel domain.
  
     0.463
cce_2440
Hypothetical protein.
  
     0.444
cce_4381
Hypothetical protein; Contains a Mechanosensitive ion channel, MscS domain.
  
     0.415
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.