STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4665ATP-dependent protease. (212 aa)    
Predicted Functional Partners:
hesA
Putative molybdenum cofactor biosynthesis/nitrogen fixation related protein.
    
 0.772
moeB
Molybdopterin biosynthesis MoeB protein.
    
 0.772
cce_1075
Hypothetical protein; Contains a WD-40 repeat and peptidase C14, caspase catalytic subunit p20 domain.
    
 0.663
cce_4519
Hypothetical protein; Contains a beta-lactamase-like domain.
     
 0.586
cce_0255
Unknown.
  
    0.531
ndhN
NADH dehydrogenase subunit N; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.512
cce_1543
Putative CAB/ELIP/HLIP superfamily protein.
  
     0.488
cce_2350
Putative alpha-helical ferredoxin.
  
     0.479
cce_2947
Unknown; Contains a GCN5-related N-acetyltransferase domain.
  
     0.478
cce_0454
Conserved hypothetical protein.
  
     0.459
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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