Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cce_4770 | gst3 | cce_4770 | cce_4701 | Hypothetical protein. | Glutathione S-transferase; Belongs to the GST superfamily. | 0.493 |
cce_4770 | rpoA | cce_4770 | cce_4039 | Hypothetical protein. | RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.548 |
cce_4770 | rpoB | cce_4770 | cce_3488 | Hypothetical protein. | RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.635 |
cysH | gst3 | cce_0258 | cce_4701 | Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. | Glutathione S-transferase; Belongs to the GST superfamily. | 0.478 |
feoA3 | gst3 | cce_4702 | cce_4701 | Probable ferrous iron transport protein A. | Glutathione S-transferase; Belongs to the GST superfamily. | 0.668 |
gst3 | cce_4770 | cce_4701 | cce_4770 | Glutathione S-transferase; Belongs to the GST superfamily. | Hypothetical protein. | 0.493 |
gst3 | cysH | cce_4701 | cce_0258 | Glutathione S-transferase; Belongs to the GST superfamily. | Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. | 0.478 |
gst3 | feoA3 | cce_4701 | cce_4702 | Glutathione S-transferase; Belongs to the GST superfamily. | Probable ferrous iron transport protein A. | 0.668 |
gst3 | lysS | cce_4701 | cce_3462 | Glutathione S-transferase; Belongs to the GST superfamily. | lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.493 |
gst3 | rpoA | cce_4701 | cce_4039 | Glutathione S-transferase; Belongs to the GST superfamily. | RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.800 |
gst3 | rpoB | cce_4701 | cce_3488 | Glutathione S-transferase; Belongs to the GST superfamily. | RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.600 |
gst3 | rpoC1 | cce_4701 | cce_3838 | Glutathione S-transferase; Belongs to the GST superfamily. | RNA polymerase gamma-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.537 |
gst3 | rpoC2 | cce_4701 | cce_3487 | Glutathione S-transferase; Belongs to the GST superfamily. | RNA polymerase beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily. | 0.537 |
gst3 | rpoZ | cce_4701 | cce_0231 | Glutathione S-transferase; Belongs to the GST superfamily. | Putative RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.494 |
gst3 | rpoZ-2 | cce_4701 | cce_0487 | Glutathione S-transferase; Belongs to the GST superfamily. | Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.494 |
lysS | gst3 | cce_3462 | cce_4701 | lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | Glutathione S-transferase; Belongs to the GST superfamily. | 0.493 |
lysS | rpoA | cce_3462 | cce_4039 | lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.548 |
lysS | rpoB | cce_3462 | cce_3488 | lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family. | RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.635 |
rpoA | cce_4770 | cce_4039 | cce_4770 | RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Hypothetical protein. | 0.548 |
rpoA | gst3 | cce_4039 | cce_4701 | RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Glutathione S-transferase; Belongs to the GST superfamily. | 0.800 |
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