Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_4707Hypothetical protein; Contains an OmpA/MotB domain. (583 aa)    
Predicted Functional Partners:
cce_4708
Putative small GTP-binding protein.
 
     0.940
slt
Probable soluble lytic transglycosylase.
 
  
 0.774
cce_4706
Hypothetical protein.
       0.773
cce_4657
Putative peptidase C14, caspase catalytic.
 
 
 0.757
cce_4705
Unknown.
       0.743
cce_4085
Hypothetical protein.
  
 
 0.722
cce_3923
Hypothetical protein; Contains glycoside hydrolase, family 19 and peptidase M15A domains.
   
 
 0.671
cce_4709
Unknown; Contains a GGDEF domain, EAL domain, and PAS fold-3 domain.
  
  
 0.632
nifJ
Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
  
   0.622
cce_4212
rfrA family pentapeptide repeat.
  
 
   0.614
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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