Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_4721WD40-like beta-propeller protein. (189 aa)    
Predicted Functional Partners:
cce_4720
Transcriptional Regulator, LuxR family.
       0.790
cce_0333
Conserved hypothetical protein.
  
     0.666
slt
Probable soluble lytic transglycosylase.
  
  
 0.639
cce_0433
Conserved hypothetical protein.
  
     0.622
cce_0541
Unknown.
  
     0.607
cce_1809
Conserved hypothetical protein.
  
     0.557
cce_2931
Conserved hypothetical protein.
  
     0.551
gst1
Glutathione S-transferase.
  
     0.535
cce_1646
Hypothetical protein; Contains a peptidase, archaeal and bacterial C-terminal domain.
  
     0.502
cce_4707
Hypothetical protein; Contains an OmpA/MotB domain.
  
 
 0.497
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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