Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_4736DUF140-containing protein; Belongs to the MlaE permease family. (263 aa)    
Predicted Functional Partners:
cce_2668
ATP-binding protein of ABC transporter.
 0.999
cce_2669
Unknown; Contains a mammalian cell entry related domain.
 
 0.995
cce_2027
Putative permease YjgP/YjgQ.
  
  
 0.775
cce_1246
Putative permease YjgP/YjgQ.
  
  
 0.769
cce_2379
Bacterial surface antigen D15-like protein.
 
     0.762
cce_2028
ATP-binding protein of ABC transporter.
 
  
  0.713
cce_3429
Hypothetical protein; Contains Anti-Sigma-factor antagonist (STAS) and glycosyl transferase domains.
   
 
 0.675
cce_0470
Hypothetical protein; Contains an Anti-sigma factor antagonist domain; Belongs to the anti-sigma-factor antagonist family.
   
 
 0.662
cce_1801
Unknown; Contains an Anti-sigma factor antagonist domain; Belongs to the anti-sigma-factor antagonist family.
   
 
 0.662
cce_3321
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
 
 0.662
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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