STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4736DUF140-containing protein; Belongs to the MlaE permease family. (263 aa)    
Predicted Functional Partners:
cce_2668
ATP-binding protein of ABC transporter.
 0.999
cce_2669
Unknown; Contains a mammalian cell entry related domain.
 
 0.998
cce_3429
Hypothetical protein; Contains Anti-Sigma-factor antagonist (STAS) and glycosyl transferase domains.
   
   0.770
cce_0470
Hypothetical protein; Contains an Anti-sigma factor antagonist domain; Belongs to the anti-sigma-factor antagonist family.
   
   0.763
cce_1801
Unknown; Contains an Anti-sigma factor antagonist domain; Belongs to the anti-sigma-factor antagonist family.
   
   0.763
cce_2379
Bacterial surface antigen D15-like protein.
 
     0.763
cce_3321
Anti-sigma factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
   0.763
cce_2028
ATP-binding protein of ABC transporter.
  
  0.716
cce_2027
Putative permease YjgP/YjgQ.
  
   
 0.662
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine o-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
    0.660
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.