Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cce_4742FraH-like protein. (213 aa)    
Predicted Functional Partners:
cce_2760
Unknown; Contains a von Willebrand factor, type A domain.
 
   
 0.797
cce_4741
Unknown; Contains a peptidase U62, modulator of DNA gyrase domain.
       0.655
cce_3605
Putative nodulation efficiency protein, NfeD.
  
     0.630
cce_2942
Unknown.
  
     0.625
cce_1000
Unknown; Contains a SMAD/FHA domain.
 
     0.617
cce_1894
Conserved hypothetical protein.
  
     0.609
cce_1893
Unknown.
  
     0.594
cce_1053
Conserved hypothetical protein.
  
     0.576
cce_0324
Unknown; Contains DUF58.
  
     0.539
pgl
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
       0.533
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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