STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4748Hypothetical protein; Contains DUF422. (296 aa)    
Predicted Functional Partners:
cce_4747
Unknown; Contains a glycosyl transferase, family 2 domain.
 
   
 0.949
cce_4746
Putative type II restriction enzyme HgiDI.
       0.718
cce_0950
Conserved hypothetical protein.
  
     0.667
cce_3673
Putative Tic22-like protein.
  
     0.658
cce_4745
Putative site-specific DNA-methyltransferase.
       0.607
cce_3240
Contains an abortive infection protein domain.
  
     0.606
cpcC1
Phycocyanin associated linker protein; Belongs to the phycobilisome linker protein family.
  
     0.589
cce_1649
Unknown; Contains a nuclear transport factor 2 domain; Belongs to the orange carotenoid-binding protein family.
  
   
 0.583
cce_3191
Hypothetical protein; Contains DUF1239.
  
     0.571
cce_3393
Unknown.
  
     0.568
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.