STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4793Hypothetical protein; Contains a DEAD/DEAH box helicase domain. (1030 aa)    
Predicted Functional Partners:
cce_5005
Hypothetical protein; Contains Helicase, C-terminal, Type III restriction enzyme, res subunit and DEAD/DEAH box helicase, N-terminal domains.
 
   
 0.850
cce_5003
Hypothetical protein; Contains a N6 adenine-specific DNA methyltransferase, N12 class domain.
 
     0.792
cce_3886
Hypothetical protein; Contains a glyoxalase/extradiol/bleomycin resistance/dioxygnease domain.
  
     0.619
cce_1148
Unknown.
  
     0.614
cce_1262
Putative Tn7-like transposition protein D.
  
     0.578
cce_1263
Putative Tn7-like transposition protein C.
  
     0.546
cce_4794
Hypothetical protein.
       0.492
cce_4660
Hypothetical protein; Contains a WD-repeat, a PAS region and a response regulator receiver domain.
  
     0.452
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.