Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_4819Hypothetical protein; Contains FG-GAP repeat domains. (368 aa)    
Predicted Functional Partners:
cce_4796
Putative peptidase; Belongs to the peptidase S8 family.
  
 
 0.564
cce_0781
Unknown; Contains a bacterial regulatory factor, effector domain.
  
     0.484
cce_2039
Putative six-hairpin glycosidase familly protein.
    
   0.479
cce_2195
Hypothetical protein; Contains a hemolysin-type calcium-binding region.
 
   0.457
cce_0117
Hypothetical protein.
  
     0.446
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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