STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4823Putative S-layer OprB family carbohydrate-selective porin; Belongs to the OprB family. (589 aa)    
Predicted Functional Partners:
cce_0462
Conserved hypothetical protein.
  
     0.770
cce_1579
Unknown; Contains a fimbrial assembly domain.
  
     0.760
cce_1053
Conserved hypothetical protein.
  
     0.753
cce_2379
Bacterial surface antigen D15-like protein.
  
   
 0.746
cce_0463
Putative resolvase, RNase H-like fold; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.745
cce_2027
Putative permease YjgP/YjgQ.
  
     0.737
cce_1893
Unknown.
  
     0.733
cce_1246
Putative permease YjgP/YjgQ.
  
     0.730
cce_1571
Unknown.
  
     0.724
cce_1368
Hypothetical protein.
  
     0.710
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
Server load: low (32%) [HD]