STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4856Hypothetical protein. (299 aa)    
Predicted Functional Partners:
cce_3077
AMP-dependent synthetase and ligase, probable acyl-CoA synthase.
 
 
 0.909
cce_3078
Polyketide synthase.
  
 
 0.794
cce_3079
Probable polyketide synthase.
  
 
 0.780
cce_4855
Probable cation efflux protein.
 
     0.719
cce_4858
WD40-like beta-propeller protein.
 
     0.629
cce_3834
Unknown.
  
     0.530
cce_4408
Hypothetical protein; Contains a peptidase M52, hydrogen uptake protein domain.
  
     0.530
cce_1466
Probable AMP-dependent synthetase and ligase.
   
 
 0.519
cce_0160
Unknown; Contains a MOSC domain.
  
     0.508
cce_3080
Polyketide synthase type I.
  
 
 0.501
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.