Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
fur4Ferric uptake regulation protein; Belongs to the Fur family. (130 aa)    
Predicted Functional Partners:
fur1
Ferric uptake regulation protein; Belongs to the Fur family.
  
     0.767
cce_0683
Putative transcriptional regulator.
 
    0.593
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.520
fur2
Probable ferric uptake regulator; Belongs to the Fur family.
  
     0.489
cce_0135
Putative rehydrin.
  
  
 0.441
tpx
Thioredoxin peroxidase.
  
  
 0.441
cce_4857
Hypothetical protein; Contains a cobalamin (vitamin B12) biosynthesis domain, cobW domain.
     
 0.432
cce_4858
WD40-like beta-propeller protein.
       0.431
rpoB
RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.423
glsF
Ferredoxin-dependent glutamate synthase.
     
 0.412
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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