STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
cce_4862Putative periplasmic solute binding protein for ABC transport system; Belongs to the bacterial solute-binding protein 9 family. (344 aa)    
Predicted Functional Partners:
cce_4861
ATP-binding protein of ABC transporter.
 
 
 0.992
cce_4860
ABC transporter permease protein.
 
 
 0.991
znuB
Zinc ABC transporter, permease protein.
 
 
 0.978
znuA
Zinc ABC transporter, ATP-binding protein.
 
 
 0.975
znuC
Zinc ABC transporter, periplasmic binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 
0.924
cce_1486
Mn2+/Zn2+ family ABC transporter, permease protein.
  
 0.900
mntB
Mn2+ ABC transporter, permease protein.
 
  
 0.894
cce_1485
Mn2+/Zn2+ family ABC transporter, ATP-binding protein.
 
  
 0.873
mntA
Mn2+ ABC transporter, ATP-binding protein.
 
  
 0.836
cce_4863
Hypothetical protein; Contains a FAD-dependent pyridine nucleotide-disulphide oxidoreductase domain.
       0.550
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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