STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4923Putative PemK-like protein; Toxic component of a type II toxin-antitoxin (TA) system. (114 aa)    
Predicted Functional Partners:
cce_4924
Hypothetical protein; Contains a ribbon-helix-helix domain.
  
 
 0.914
cce_2860
Putative PemK-like protein; Toxic component of a type II toxin-antitoxin (TA) system.
  
     0.774
mazE
Putative cell growth regulatory protein.
  
 
 0.768
cce_2859
Hypothetical protein.
  
 
 0.607
cce_4925
Hypothetical protein; Contains a Type I restriction enzyme R protein, N terminus domain.
       0.566
psbB
Photosystem II CP47 protein, 47 kD chlorophyll-binding protein; One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light- induced photochemical processes of PSII. PSII is a light-driven water:plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation; Belongs to the PsbB/PsbC family. PsbB subfamily.
    
   0.493
cce_4926
Hypothetical protein; Contains DUF820.
       0.419
xerC
Integrase-recombinase protein; Belongs to the 'phage' integrase family.
       0.418
cce_2127
DUF901-containing protein.
  
     0.401
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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