Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_4930Hypothetical protein; Contains a TPR-like helical domain. (785 aa)    
Predicted Functional Partners:
cce_4931
Hypothetical protein; Contains a filamentous haemagglutinin, N-terminal domain.
 
     0.864
cce_5047
Hypothetical protein; Contains a bacterial surface antigen (D15) and Polypeptide-transport-associated, ShlB-type domain.
  
     0.772
cce_5012
Unknown; Contains a TPR-like helical domain.
  
     0.771
cce_0323
Hypothetical protein; Contains a bacterial surface antigen (D15) and Polypeptide-transport-associated, ShlB-type domain.
  
     0.769
cce_5046
Hypothetical protein; Contains a filamentous haemagglutinin, N-terminal domain.
  
     0.769
cce_0322
Hypothetical protein; Contains a filamentous haemagglutinin, N-terminal domain.
  
     0.767
cce_4932
Hypothetical protein; Contains a polypeptide-transport-associated, ShlB-type domain.
  
     0.756
cce_2242
Hypothetical protein; Contains a bacterial surface antigen (D15) domain.
  
     0.740
cce_5042
Hypothetical protein; Contains a CHASE2 extracellular sensory domain.
 
     0.605
cce_4928
Probable adenylate cyclase.
       0.588
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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