STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4994Putative transfer complex protein TrsK. (614 aa)    
Predicted Functional Partners:
cce_4995
Hypothetical protein.
       0.671
cce_4986
Conserved hypothetical protein.
  
  
 0.597
psb28-2
Photosystem II 13 kD protein; Belongs to the Psb28 family.
  
     0.594
cce_1869
Hypothetical protein.
  
     0.591
cce_4991
Hypothetical protein.
       0.578
cce_4992
Hypothetical protein.
       0.578
cce_4993
Hypothetical protein.
       0.578
cce_4989
Conserved hypothetical protein.
       0.576
cce_4990
Hypothetical protein.
       0.574
cce_4981
Hypothetical protein; Contains a relaxase/mobilization nuclease domain.
 
   
 0.572
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.