STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_4998Contains a PilT protein, N-terminal domain. (145 aa)    
Predicted Functional Partners:
cce_4999
Hypothetical protein.
       0.784
cce_1257
Unknown.
  
     0.609
cce_5002
Hypothetical protein; Contains DUF1568.
 
     0.608
cce_4093
Unknown.
  
     0.577
cce_3844
Hypothetical protein; Contains DUF202.
  
     0.569
cce_5000
Putative plasmid maintenance toxin/cell growth inhibitor.
     
 0.533
cce_5001
Unknown.
       0.529
cce_3846
Hypothetical protein; Contains DUF202.
  
     0.514
cce_1649
Unknown; Contains a nuclear transport factor 2 domain; Belongs to the orange carotenoid-binding protein family.
  
     0.451
cce_4239
CHP1784-containing protein.
  
     0.414
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.