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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Assay-based Predictions
experimentally determined
co-expression
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gene co-occurrence
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cce_5029Putative group 3/4 sigma-70 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (216 aa)    
Predicted Functional Partners:
cce_2232
Two-component sensor histidine kinase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.957
cce_5028
Hypothetical protein.
       0.773
cce_4317
CheA signal transduction histidine kinase.
  
  
 0.725
rpoB
RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.701
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.698
cce_5026
Hypothetical protein.
       0.678
cce_5027
Hypothetical protein.
       0.678
pmgA
Photomixotrophic growth related protein.
  
 
 0.625
cce_3319
Hypothetical protein; Contains an ATP-binding region, ATPase-like domain.
  
 
 0.625
cce_3428
Hypothetical protein.
  
 
 0.625
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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