STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_5086Probable short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (244 aa)    
Predicted Functional Partners:
cce_3034
Peptide synthetase.
 
    0.916
cce_3042
Peptide synthetase.
 
  
 0.910
cce_3075
Peptide synthetase.
      0.901
cce_5088
Transcriptional Regulator, AraC family.
 
     0.765
cce_5087
Probable short-chain dehydrogenase/reductase SDR.
 
   
0.754
cce_3050
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
    0.681
cce_3043
Putative thioester reductase.
      0.671
cce_3078
Polyketide synthase.
  
 
 0.541
cce_4559
Unknown.
  
    0.513
cce_3079
Probable polyketide synthase.
  
  
 0.512
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.