STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_5144Putative AAA ATPase. (370 aa)    
Predicted Functional Partners:
cce_5150
Hypothetical protein; Contains DUF457, transmembrane.
 
     0.816
cce_4563
Hypothetical protein; Contains a DNA breaking-rejoining enzyme, catalytic core domain.
  
   
 0.676
cce_1908
Conserved hypothetical protein.
  
  
 0.664
cce_2118
Conserved hypothetical protein.
  
  
 0.664
cce_4642
Probable alkaline phosphatase.
  
    0.663
cce_1718
Putative amidohydrolase.
  
     0.624
cce_3623
Putative membrane protein.
  
     0.612
cce_5094
Hypothetical protein.
  
     0.592
cce_0954
Unknown.
  
     0.590
cce_0117
Hypothetical protein.
  
     0.577
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.