STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYK47444.11,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)    
Predicted Functional Partners:
KYK47057.1
Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.831
KYK47042.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.781
KYK45050.1
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.780
KYK47443.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KYK47160.1
Polyhydroxybutyrate depolymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.763
KYK44182.1
Apple domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.683
KYK50346.1
Pectin esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.680
KYK50345.1
Polygalacturonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.674
KYK44219.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.671
A1D31_39905
Transposase; Incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.671
Your Current Organism:
Bradyrhizobium liaoningense
NCBI taxonomy Id: 43992
Other names: ATCC 700350, B. liaoningense, Bradyrhizobium sp. 4345, Bradyrhizobium sp. Spr3-7, CIP 104858, LMG 18230, LMG:18230, NBRC 100396, strain 2281
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.