STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmAtRNA/tmRNA (uracil-C(5))-methyltransferase. (367 aa)    
Predicted Functional Partners:
tmcA
tRNA(Met) cytidine acetyltransferase TmcA.
   
    0.673
trmB
tRNA (guanine-N(7)-)-methyltransferase.
  
  
 0.564
GCA_000819765_02391
Hypothetical protein.
       0.562
rpsA_1
30S ribosomal protein S1.
  
    0.528
cah
Carbonic anhydrase.
   
    0.525
rlmL
Ribosomal RNA large subunit methyltransferase K/L.
 
  
 0.515
truD
tRNA pseudouridine synthase D.
 
  
 0.492
luxS
S-ribosylhomocysteine lyase.
  
     0.491
thiI
tRNA sulfurtransferase.
 
   
 0.472
dusC
tRNA-dihydrouridine(16) synthase.
 
  
 0.472
Your Current Organism:
Aeromonas bivalvium
NCBI taxonomy Id: 440079
Other names: A. bivalvium, Aeromonas bivalvium Minana-Galbis et al. 2007, Aeromonas sp. 665N, Aeromonas sp. 868E, CECT 7113, LMG 23376, LMG:23376, strain 868E
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