STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tyrPTyrosine-specific transport protein. (397 aa)    
Predicted Functional Partners:
hdaH
Histone deacetylase-like amidohydrolase.
    
 0.836
GCA_000819765_01330
Hypothetical protein.
    
 0.731
GCA_000819765_01893
Hypothetical protein.
    
 0.731
ycdZ
Inner membrane protein YcdZ.
  
     0.627
tehB
Putative S-adenosyl-L-methionine-dependent methyltransferase TehB.
  
     0.618
dcuD
Putative cryptic C4-dicarboxylate transporter DcuD.
  
     0.554
nrfB
Cytochrome c-type protein NrfB.
  
     0.473
cdd
Cytidine deaminase.
  
     0.446
GCA_000819765_02531
Hypothetical protein.
  
     0.443
GCA_000819765_02422
Hypothetical protein.
       0.428
Your Current Organism:
Aeromonas bivalvium
NCBI taxonomy Id: 440079
Other names: A. bivalvium, Aeromonas bivalvium Minana-Galbis et al. 2007, Aeromonas sp. 665N, Aeromonas sp. 868E, CECT 7113, LMG 23376, LMG:23376, strain 868E
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.