STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recNDNA repair protein RecN. (554 aa)    
Predicted Functional Partners:
recA
Protein RecA.
  
  
 0.902
GCA_000819765_02646
Hypothetical protein.
   
  
 0.881
lexA
LexA repressor.
   
  
 0.871
GCA_000819765_00122
Hypothetical protein.
   
  
 0.708
mfd
Transcription-repair-coupling factor.
 
   
 0.687
uvrC
UvrABC system protein C.
  
   
 0.632
xseA
Exodeoxyribonuclease 7 large subunit.
 
   
 0.626
ruvA
Holliday junction ATP-dependent DNA helicase RuvA.
 
  
 0.600
recX
Regulatory protein RecX.
  
  
 0.590
dinB
DNA polymerase IV.
  
  
 0.570
Your Current Organism:
Aeromonas bivalvium
NCBI taxonomy Id: 440079
Other names: A. bivalvium, Aeromonas bivalvium Minana-Galbis et al. 2007, Aeromonas sp. 665N, Aeromonas sp. 868E, CECT 7113, LMG 23376, LMG:23376, strain 868E
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.