Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OMO_00256 | OMO_00257 | GCA_001318175_00619 | GCA_001318175_00620 | Unannotated protein. | Unannotated protein. | 0.979 |
OMO_00256 | OMO_01288 | GCA_001318175_00619 | GCA_001318175_01693 | Unannotated protein. | Unannotated protein. | 0.453 |
OMO_00257 | OMO_00256 | GCA_001318175_00620 | GCA_001318175_00619 | Unannotated protein. | Unannotated protein. | 0.979 |
OMO_00257 | OMO_01288 | GCA_001318175_00620 | GCA_001318175_01693 | Unannotated protein. | Unannotated protein. | 0.467 |
OMO_01167 | OMO_01288 | GCA_001318175_01870 | GCA_001318175_01693 | Unannotated protein. | Unannotated protein. | 0.473 |
OMO_01284 | OMO_01285 | GCA_001318175_01697 | GCA_001318175_01696 | Unannotated protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Unannotated protein. | 0.462 |
OMO_01284 | OMO_01286 | GCA_001318175_01697 | GCA_001318175_01695 | Unannotated protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.758 |
OMO_01284 | OMO_01288 | GCA_001318175_01697 | GCA_001318175_01693 | Unannotated protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Unannotated protein. | 0.753 |
OMO_01284 | OMO_01289 | GCA_001318175_01697 | GCA_001318175_01692 | Unannotated protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Unannotated protein. | 0.406 |
OMO_01284 | dtd | GCA_001318175_01697 | GCA_001318175_01698 | Unannotated protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Unannotated protein; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. | 0.901 |
OMO_01284 | prmA | GCA_001318175_01697 | GCA_001318175_01694 | Unannotated protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | Unannotated protein; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.797 |
OMO_01285 | OMO_01284 | GCA_001318175_01696 | GCA_001318175_01697 | Unannotated protein. | Unannotated protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.462 |
OMO_01285 | OMO_01286 | GCA_001318175_01696 | GCA_001318175_01695 | Unannotated protein. | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.762 |
OMO_01285 | OMO_01288 | GCA_001318175_01696 | GCA_001318175_01693 | Unannotated protein. | Unannotated protein. | 0.736 |
OMO_01285 | OMO_01289 | GCA_001318175_01696 | GCA_001318175_01692 | Unannotated protein. | Unannotated protein. | 0.490 |
OMO_01285 | dtd | GCA_001318175_01696 | GCA_001318175_01698 | Unannotated protein. | Unannotated protein; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. | 0.462 |
OMO_01285 | prmA | GCA_001318175_01696 | GCA_001318175_01694 | Unannotated protein. | Unannotated protein; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.762 |
OMO_01286 | OMO_01284 | GCA_001318175_01695 | GCA_001318175_01697 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.758 |
OMO_01286 | OMO_01285 | GCA_001318175_01695 | GCA_001318175_01696 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein. | 0.762 |
OMO_01286 | OMO_01288 | GCA_001318175_01695 | GCA_001318175_01693 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein. | 0.848 |
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