Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OMO_00289 | OMO_01102 | GCA_001318175_00653 | GCA_001318175_01903 | Unannotated protein. | Unannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.623 |
OMO_00289 | dnaX | GCA_001318175_00653 | GCA_001318175_01902 | Unannotated protein. | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.753 |
OMO_00289 | ffh | GCA_001318175_00653 | GCA_001318175_02031 | Unannotated protein. | Unannotated protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.616 |
OMO_00289 | recR | GCA_001318175_00653 | GCA_001318175_01904 | Unannotated protein. | Unannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.919 |
OMO_00289 | rsmI | GCA_001318175_00653 | GCA_001318175_01910 | Unannotated protein. | Unannotated protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.692 |
OMO_01096 | OMO_01097 | GCA_001318175_01909 | GCA_001318175_01908 | Unannotated protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Unannotated protein. | 0.877 |
OMO_01096 | OMO_01098 | GCA_001318175_01909 | GCA_001318175_01907 | Unannotated protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Unannotated protein. | 0.901 |
OMO_01096 | OMO_01099 | GCA_001318175_01909 | GCA_001318175_01906 | Unannotated protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Unannotated protein. | 0.816 |
OMO_01096 | OMO_01102 | GCA_001318175_01909 | GCA_001318175_01903 | Unannotated protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Unannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.788 |
OMO_01096 | dnaX | GCA_001318175_01909 | GCA_001318175_01902 | Unannotated protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.665 |
OMO_01096 | recR | GCA_001318175_01909 | GCA_001318175_01904 | Unannotated protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Unannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.798 |
OMO_01096 | rsmI | GCA_001318175_01909 | GCA_001318175_01910 | Unannotated protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Unannotated protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.860 |
OMO_01096 | tmk | GCA_001318175_01909 | GCA_001318175_01905 | Unannotated protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | Unannotated protein; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.861 |
OMO_01097 | OMO_01096 | GCA_001318175_01908 | GCA_001318175_01909 | Unannotated protein. | Unannotated protein; Involved in initiation control of chromosome replication. Belongs to the YabA family. | 0.877 |
OMO_01097 | OMO_01098 | GCA_001318175_01908 | GCA_001318175_01907 | Unannotated protein. | Unannotated protein. | 0.857 |
OMO_01097 | OMO_01099 | GCA_001318175_01908 | GCA_001318175_01906 | Unannotated protein. | Unannotated protein. | 0.844 |
OMO_01097 | OMO_01102 | GCA_001318175_01908 | GCA_001318175_01903 | Unannotated protein. | Unannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.790 |
OMO_01097 | dnaX | GCA_001318175_01908 | GCA_001318175_01902 | Unannotated protein. | Unannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.810 |
OMO_01097 | recR | GCA_001318175_01908 | GCA_001318175_01904 | Unannotated protein. | Unannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.801 |
OMO_01097 | rsmI | GCA_001318175_01908 | GCA_001318175_01910 | Unannotated protein. | Unannotated protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.860 |
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