Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OJG39886.1RpiR family transcriptional regulator. (248 aa)    
Predicted Functional Partners:
OJG38745.1
Hypothetical protein.
  
     0.703
OJG39887.1
1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
     0.685
OJG37717.1
Hypothetical protein.
  
     0.543
lacD
Tagatose-bisphosphate aldolase; Belongs to the aldolase LacD family.
 
     0.503
OJG38988.1
AgaS protein.
  
     0.484
OJG39888.1
PTS system fructose-specific transporter subunit IIBC.
     
 0.479
OJG39889.1
PTS system IIA component.
 
     0.456
OJG38607.1
PTS system sugar-specific IIBC component.
 
  
 0.423
Your Current Organism:
Enterococcus dispar
NCBI taxonomy Id: 44009
Other names: ATCC 51266, CCUG 33309, CIP 103646, DSM 6630, E. dispar, HAMBI 2231, LMG 13521, LMG:13521, NBRC 100678, NCFB 2821, NCIMB 13000, strain E18-1
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