AWC00_02170 protein (Mycobacterium conspicuum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AWC00_02170

PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity. (283 aa)

Predicted Functional Partners:

ORV47433.1

0.761

ORV46794.1

0.759

ORV41387.1

0.759

ORV40099.1

0.759

ORV41386.1

0.756

ORV38399.1

0.756

ORV37909.1

0.754

ORV41480.1

0.753

ORV41495.1

0.753

ORV37049.1

0.753

Your Current Organism:

Mycobacterium conspicuum

NCBI taxonomy Id: 44010
Other names: ATCC 700090, CIP 105165, DSM 44136, JCM 14738, M. conspicuum, strain 3895/92

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AWC00_02170	ORV37049.1	AWC00_02170	AWC00_23395	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.753
AWC00_02170	ORV37909.1	AWC00_02170	AWC00_22045	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.754
AWC00_02170	ORV38399.1	AWC00_02170	AWC00_19970	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.756
AWC00_02170	ORV40099.1	AWC00_02170	AWC00_17155	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.759
AWC00_02170	ORV41386.1	AWC00_02170	AWC00_14280	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.756
AWC00_02170	ORV41387.1	AWC00_02170	AWC00_14285	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.759
AWC00_02170	ORV41480.1	AWC00_02170	AWC00_14835	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.753
AWC00_02170	ORV41495.1	AWC00_02170	AWC00_14915	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.753
AWC00_02170	ORV46794.1	AWC00_02170	AWC00_03455	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.759
AWC00_02170	ORV47433.1	AWC00_02170	AWC00_01765	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.761
ORV37049.1	AWC00_02170	AWC00_23395	AWC00_02170	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.753
ORV37909.1	AWC00_02170	AWC00_22045	AWC00_02170	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.754
ORV38399.1	AWC00_02170	AWC00_19970	AWC00_02170	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.756
ORV40099.1	AWC00_02170	AWC00_17155	AWC00_02170	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.759
ORV41386.1	AWC00_02170	AWC00_14280	AWC00_02170	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.756
ORV41386.1	ORV41387.1	AWC00_14280	AWC00_14285	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.776
ORV41387.1	AWC00_02170	AWC00_14285	AWC00_02170	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.759
ORV41387.1	ORV41386.1	AWC00_14285	AWC00_14280	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.776
ORV41480.1	AWC00_02170	AWC00_14835	AWC00_02170	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.753
ORV41495.1	AWC00_02170	AWC00_14915	AWC00_02170	SAM-dependent methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	PE family protein; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.	0.753