Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ORV46797.1 | ORV46798.1 | AWC00_03475 | AWC00_03480 | Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0225 family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.798 |
| ORV46797.1 | ORV46799.1 | AWC00_03475 | AWC00_03485 | Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0225 family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.462 |
| ORV46797.1 | ffh | AWC00_03475 | AWC00_27230 | Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0225 family. | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.433 |
| ORV46797.1 | secY | AWC00_03475 | AWC00_14920 | Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0225 family. | Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.488 |
| ORV46798.1 | ORV46797.1 | AWC00_03480 | AWC00_03475 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0225 family. | 0.798 |
| ORV46798.1 | ORV46799.1 | AWC00_03480 | AWC00_03485 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.462 |
| ORV46799.1 | ORV46797.1 | AWC00_03485 | AWC00_03475 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0225 family. | 0.462 |
| ORV46799.1 | ORV46798.1 | AWC00_03485 | AWC00_03480 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.462 |
| ffh | ORV46797.1 | AWC00_27230 | AWC00_03475 | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0225 family. | 0.433 |
| ffh | secY | AWC00_27230 | AWC00_14920 | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.995 |
| secY | ORV46797.1 | AWC00_14920 | AWC00_03475 | Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | Zinc chelation protein SecC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0225 family. | 0.488 |
| secY | ffh | AWC00_14920 | AWC00_27230 | Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.995 |