STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORV43854.1Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
AWC00_11640
Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing start; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.977
ORV41757.1
3-oxoacyl-ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.953
ORV43855.1
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.775
ORV46691.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
ORV46709.1
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
ORV32678.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.764
ORV43736.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.764
ORV44276.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.761
ORV44173.1
Glucose 1-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.759
ORV41790.1
Glucose 1-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
Your Current Organism:
Mycobacterium conspicuum
NCBI taxonomy Id: 44010
Other names: ATCC 700090, CIP 105165, DSM 44136, JCM 14738, M. conspicuum, strain 3895/92
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