STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ORV42137.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (385 aa)    
Predicted Functional Partners:
ORV42138.1
PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.835
ORV42140.1
Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
ORV42139.1
Secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.539
ORV42136.1
Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.
       0.488
ORV42145.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.434
ORV42134.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.429
ORV42135.1
Type VII secretion protein EsxI; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the WXG100 family.
       0.422
Your Current Organism:
Mycobacterium conspicuum
NCBI taxonomy Id: 44010
Other names: ATCC 700090, CIP 105165, DSM 44136, JCM 14738, M. conspicuum, strain 3895/92
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