ORV39278.1 protein (Mycobacterium conspicuum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ORV39278.1

Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)

Predicted Functional Partners:

ORV39279.1

0.998

ORV39295.1

0.966

ORV39294.1

0.953

ORV39277.1

0.429

ORV41385.1

0.403

Your Current Organism:

Mycobacterium conspicuum

NCBI taxonomy Id: 44010
Other names: ATCC 700090, CIP 105165, DSM 44136, JCM 14738, M. conspicuum, strain 3895/92

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORV39277.1	ORV39278.1	AWC00_18435	AWC00_18445	RNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
ORV39277.1	ORV39279.1	AWC00_18435	AWC00_18455	RNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
ORV39277.1	ORV39294.1	AWC00_18435	AWC00_18440	RNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.456
ORV39277.1	ORV39295.1	AWC00_18435	AWC00_18450	RNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
ORV39278.1	ORV39277.1	AWC00_18445	AWC00_18435	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.	0.429
ORV39278.1	ORV39279.1	AWC00_18445	AWC00_18455	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ORV39278.1	ORV39294.1	AWC00_18445	AWC00_18440	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
ORV39278.1	ORV39295.1	AWC00_18445	AWC00_18450	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
ORV39278.1	ORV41385.1	AWC00_18445	AWC00_14275	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
ORV39279.1	ORV39277.1	AWC00_18455	AWC00_18435	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.	0.436
ORV39279.1	ORV39278.1	AWC00_18455	AWC00_18445	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
ORV39279.1	ORV39294.1	AWC00_18455	AWC00_18440	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
ORV39279.1	ORV39295.1	AWC00_18455	AWC00_18450	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ORV39294.1	ORV39277.1	AWC00_18440	AWC00_18435	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.	0.456
ORV39294.1	ORV39278.1	AWC00_18440	AWC00_18445	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
ORV39294.1	ORV39279.1	AWC00_18440	AWC00_18455	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
ORV39294.1	ORV39295.1	AWC00_18440	AWC00_18450	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
ORV39295.1	ORV39277.1	AWC00_18450	AWC00_18435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.	0.446
ORV39295.1	ORV39278.1	AWC00_18450	AWC00_18445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
ORV39295.1	ORV39279.1	AWC00_18450	AWC00_18455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995

page 1 of 2

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About